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Publications:


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2010

  •  Gordon P.M.K., Barker K., Sensen C.W. (2010). Can Biologists Effectively Build Workflows, Without Programming? Database Integration for the Life Sciences 2010 [in press]
  • Gordon, P.M.K., Barker, K, Senssen, C.W. (2010). Helping Molecular Biologists Effectively Build Workflows, Without Programming.  In: Proceedings of 7th International Conference on Data Integration in the Life Sciences (DILS 2010) (Gothenburg, Sweden), August 25-27, 2010, pp. 74-89.
  • Gordon P.M.K., Barker K., Sensen C.W. (2010). Programming-by-example meets the Semantic Web - Using Ontologies and Web Services to close the Semantic Web. IEEE Visual Languages and Human Centric Computing Conference (Leganes-Madrid, Spain), September 21-25, 2010, pp. 133-140.
  • Ramos-Padrón, E., Bordenave, S., Lin, S., Bhaskar, I.M., Dong, X., Sensen, C., Fournier, J., Voordouw, G., Gieg, L.M. (2010). Carbon and Sulfur Cycling by Microbial Communities in a Gypsum-Treated Oil Sands Tailing Pond. Environmental Science & Technology.  [in press]
  • Schmidt E.J., Parsons T.E., Jamniczky H.A., Gitelman J., Trpkov C., Boughner J., Logan C.C., Sensen C.W., Hallgrímsson B. (2010) Micro-computed tomography-based phenotypic approaches in embryology: Sources and effects of procedural artifacts on assessments of embryonic craniofacial growth and development. BMC Developmental Biology 10:18
  • Xiao M., Soh J., Meruvia-Pastor O., Schmidt E., Hallgrímsson B., Sensen C.W. (2010). Building Generic Anatomical Models Using Virtual Model Cutting and Iterative Registration. BMC Medical Imaging 10:5
  • Xiao M., Soh J., Taschuk M.L., Turinsky A., Parsons T.E., Hallgrímsson B., Sensen C.W. (2010). Visualization of Biological Shape Transformations by 3D Model Morphing. ACM International Conference on Bioinformatics and Computational Biology 2010, Niagara Falls, New York, U.S.A. [in press]
  • Zuccolo J., Bau J., Childs S., Goss G., Sensen C.W., Deans J. (2010). Phylogenetic Analysis of the MS4A and TMEM176 Gene Families. PLoS One 5:e9369

2009

  •   Antranikian G., Ruepp A., Gordon P.M.K., Ballschmiter A., Zibat A., Sensen C.W., Frishman D., Liebl W., Klenk H.-P. (2009) Rapid access to genes of biotechnologically useful enzymes by partial genome sequencing: the thermoalkaliphile Anaerobranca gottschalkii. Journal of Molecular Microbiology and Biotechnology 16:81-90
  • Soh J., Turinsky A.L., Trinh Q.M., Chang J., Sabhaney A., Dong X., Gordon P.M.K., Janzen R.P.W., Hau D., Wishart D.S., Sensen C.W. (2009) Spatiotemporal Integration of Molecular and Anatomical Data in Virtual Reality using Semantic Mapping. Int. J. Nanomedicine 4:79-89 (online)
  • Toronto International Data Release Workshop Authors, Birney E., Hudson T.J., Green E.D., Gunter C., Eddy S., Rogers J., Harris J.R., Ehrlich S.D., Apweiler R., Austin C.P., Berglund L., Bobrow M., Bountra C., Brookes A.J., Cambon-Thomsen A., Carter N.P., Chishold R.L., Contreras J.L., Cooke R.M., Crosby W.L., Dewar K., Durbin R., Dyke S.O., Ecker J.R., Ei Emam K., Feuk L., Gabriel S.B., Gallacher J., Gelbart W.M., Granell A., Guarner F., Hubbard T., Jackson S.A., Jennings J.L., Joly Y., Jones S.M., Kaye J., Kennedy K.L., Knoppers B.M., Kyrpides N.C., Lowrance W.W., Luo J., MacKay J.J., Martin-Riveira L., McCombie W.R., McPherson J.D., Miller L., Miller W., Moerman D., Mooser V., Morton C.C., Ostell J.M., Oellette B.F., Parkhill J., Raina P.S., Rawlings C., Scherer S.E., Scherer S.W., Schofield P.N., Sensen C.W., Stodden V.C., Sussman M.R., Tanaka T., Thornton J., Tsunoda T., Valle D., Vuorio E.I., Walker N.M., Wallace S., Weinstock G., Whitman W.B., Worley K.C., Wu J., Yu J. (2009) Prepubication data sharing. Nature 461:168-170

2008

  •  Borowski K., Soh J., Sensen C.W. (2008) Visual Comparison of Multiple Gene Expression Datasets in a Genomic Context. Journal of Integrative Bioinformatics 5:1-10 (online)
  •  Caffrey S.M., Park H.-S., Been J., Gordon P., Sensen C.W., Voordouw G. (2008) Gene expression of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions. Applied Environmental Microbiology 74:2404-2413 (online)
  • Gordon P.M.K., Schütz E., Beck J., Urnovitz H.B., Graham C., Clark R., Dudas S., Czub S., Sensen M., Brenig B., Groschup M.H., Church R.B., Sensen C.W. (2008) Disease-Specific Motifs can be identified in Circulating Nucleic Acids from live Elk and Cattle infected with Transmissible Spongiform Encephalopathies. Nuc. Ac. Res. 37:550-556 (online)
  • Gordon P.M.K., Soliman M.A., Bose P., Trinh Q., Sensen C.W., Riabowol K. (2008) Interspecies data mining to predict novel protein-protein interactions in human. BMC Genomics 18:426 (online)
  • Ruan Y., Sensen C.W., van der Hoorn F.A. (2008) A Novel Group of Multi-GAP-Domain Proteins. Molecular Reproduction and Development 75:1578-1589
  • Soh J., Gordon P.M.K., Taschuk M.L., Dong A., Ah-Seng A.C., Turinsky A.L., Sensen C.W. (2008) Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking. BMC Bioinformatics 9:450 (online)
  • Turinsky A.L., Fanea E., Trinh Q., Dong X., Shu X., Stromer J.N., Wat S., Hallgrímsson B., Hill J.W., Edwards C., Grosenik B., Yajima M., Sensen C.W. (2008) CAVEman: Standardized Anatomical Context for Biomedical Data Mapping. Anatomical Science Education 1:10-18 (online)
  • Turinsky A.L., Fanea E., Trinh Q., Dong X., Stromer J.N., Shu X., Wat S., Hallgrímsson B., Hill J.W., Edwards C., Grosenik B., Yajima M., Sensen C.W. (2008) Integration of Genomic and Medical Data into a 3D Atlas of Human Anatomy. Studies in Health Technology and Informatics 132:526-531
  • Wilkinson M.D., Senger M., Kawas E., Bruskiewich R., Carrere S., Gouzy J., Noirot C., Bardou P., Ng A., Haase D., de Andres Saiz E., Wang D., Gibbons F., Gordon P.M.K., Sensen C.W., Rodgriguez Carrasco J.M., Fernández J.M., Shen L., Links M., Ng M., Opushneva N., Neerincx P., Ernst R., Twigger S., Usadel B., Good B., Wong Y., Stein L., Crosby W., Karlsson J., Royo R., Párraga I., Ramirez S., Gelpi J.L., Trelles O., Pisano D.G., Jimenez N., Kerhornou A., Rosset R., Zamacola L., Tarraga J., Huerta-Cepas J., Carazo J.M., Dopazo J., Guigo R., Navarro A., Orozco M., Valencia A., Claros G., Perez-Pulido A., Rojano M.M., Fernandez-Santa Cruz R., Navas I., Schiltz G., Farmer A., Gessler D., Schoof H., Groscurth A. (2008) Interoperability with Moby 1.0 - It's Better than Sharing Your Toothbrush! Brief. Bioinform. 9:220-231 

2007

  • Cooper D.M.L., Thomas C.D., Clement J.G., Turinsky A.L., Sensen C.W., Hallgrímsson B. (2007) Age-dependent change in the 3D structure of cortical porosity at the human femoral midshaft. Bone 40:957-965
  • Cooper D.M.L., Turinsky A.L., Sensen C.W., Hallgrímsson B. (2007) Effect of Voxel Size on 3D Micro-CT Analysis of Cortical Bone Porosity. Calcified Tissue International 80:211-219
  • Fröls S., Gordon P.M.K., Arcellana Panlilio M., Duggin I.G., Bell S.D., Sensen C.W., Schleper C. (2007) Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage. J. Bacteriol. 189:8708-8718 (online)
  •  Fröls S., Gordon P.M.K., Arcellana Panlilio M., Schleper C., Sensen C.W. (2007) Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology 15:48-59
  •  Gordon P.M.K., Sensen C.W. (2007) Seahawk: moving beyond HTML in Web-based bioinformatics analysis. BMC Bioinformatics 18:208 (online)
  • Gordon P.M.K., Trinh Q., Sensen C.W. (2007) Semantic Web Service Provision: a Realistic Framework for Bioinformatics Programmers. Bioinformatics 23:1178-1180
  • Ruecker N.J., Braithwaite S.L., Topp E., Edge T., Lapen D.R., Wilkes G., Robertson W., Medeiros D., Sensen C.W., Neumann N.F. (2007) Tracking Host Sources of Cryptosporidium spp. in Raw Water for Improved Health Risk Assessment. Applied and Environmental Microbiology 73:3945-3957 (online)

2006

  • Turinsky A., Sensen C.W. (2006) On the Way to Building an Integrated Computational Environment for the Study of Developmental Patterns and Genetic Diseases. International Journal of Nanomedicine 1:89-96
  • Gordon P.M.K., Weinel C., Jacobi C., Kämpf U., Kriventseva E., Sensen C.W. (2006) Creating hierarchical models of protein families based on ESTs: The "Sprockets" analysis pipeline. Analytica Chimica Acta 564:123-132
  • Murata J., Bienzle D., Brandle J.E., Sensen C.W., De Luca V. (2006) Expressed sequences tags from Madagascar periwinkle (Catharanthus roseus). FEBS Letters 580:4501-4507

  • Cooper D.M.L., Turinsky A.L., Sensen C.W., Hallgrímsson B. (2006) Effect of Voxel Size on 3D Micro-CT Analysis of Cortical Bone Porosity. Calcified Tissue International [in press]

  • Liapounova N.A., Hampl V., Gordon P.M.K., Sensen C.W., Gedamu L., Dacks J.B. (2006) Reconstructing the Mosaic Glycolytic Pathway of the Anaerobic Eukaryote Monocercomonoides. Eukaryotic Cell [in press]

  • Zulak K.G., Cornish A., Daskalchuk T.E., Deyholos M.K., Goodenowe D.B., Gordon P.M.K., Klassen D., Pelcher L.E., Sensen C.W., Facchini P.J. (2006) Gene Transcript and Metabolite Profiling of Cultured Opium Poppy Cells Reveals the Integrated Biochemical Machinery of an Alkaloid Factory. Planta [in press]

2005

  • He G.H.Y., Helbing C.C., Wagner M.J., Sensen C.W., Riabowol K. (2005) Phylogenetic analysis of the ING family of PHD finger proteins. Molecular Biology and Evolution 22:104-116

  • Stromer J.N., Quon G.T., Gordon P.M.K., Turinsky A.L., Sensen C.W. (2005) JABIRU: Harnessing Java 3D Behaviours for Device and Display Portability. IEEE Computer Graphics & Application 25:70-80

  • Technau U., Rudd S., Maxwell P., Gordon P.M.K., Saina M., Grasso L.C., Hayward D.C., Sensen C.W., Saint R., Holstein T.W., Ball E.E., Miller D.J. (2005) Maintenance of non-metazoan genes in two basal cnidarians. Trends in Genetics 21:633-639 (online)

2004

  • Siebers B, Tjaden B, Michalke K, Dörr C, Ahmed H, Zaparty M, Gordon P, Sensen CW, Zibat A, Klenk H-P, Schuster SC, Hensel R (2004) Reconstruction of the Central Carbohydrate Metabolism of Thermoproteus tenax by Use of Genomic and Biochemical Data. J Bacteriol. 186:2179-2194 (online)

  • Turinsky A., Ah-Seng A.C., Gordon P.M.K., Stromer J.N., Taschuk M.L., Xu E.W., Sensen C.W. (2004) Bioinformatics Visualization and Integration with Open Standards: The Bluejay Genomic Browser. In Silico Biol. 5:0018 (online)

  • Gordon P.M.K., Sensen C.W. (2004) Osprey: A comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays. Nucleic Acids Research 29:e133 (online)

2003

  • Sensen C.W. (2003) From Model Organisms to Organismal Models: Visualizing Complex Genomic Datasets. Biosilico 1:23-26

  • Quon G.T., Gordon P., Sensen C.W. (2003) 4D Bioinformatics: A New Look at the Ribosome as an Example. IUBMB Life 55:279-283

  • Cooper D.M.L., Turinsky A.L., Sensen C.W., Hallgrímsson B. (2003) Quantitative 3D Analysis of the Canal Network in Cortical Bone by Micro-Computed Tomography. Anat. Rec. 274:169-179

2002

  • Bapteste E., Brinkmann H., Lee J.A., Moore D.V., Sensen C.W., Gordon P., Duruflé L., Gaasterland T., Lopez P., Müller M., Philippe H. (2002) The analysis of 100 genes supports the grouping of three highly divergent amobae: Dictyostelium, Entamoeba and Mastigamoeba. PNAS 99:1414-1419 (online)

  • Arisue N., Hashimoto T., Lee J.A., Moore D.V., Gordon P., Sensen C.W., Gaasterland T., Hasegawa M., Müller M. (2002) The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2. J. Eukaryot. Microbiol. 49:1-10

  • Nantel A., Dignard D., Bachewich C., Harcus D., Marcil A., Bouin A.-P., Sensen C.W., Hogues H., van het Hoog M., Gordon P., Rigby T., Benoit F., Tessier D.C., Thomas D.Y., Whiteway M. (2002) Transcription profiling of Candida albicans cells undergoing the yeast-to-hyphal transition. Mol. Biol. Cell 13:3452-3465 (online)

  • Quaiser A., Ochsenreiter T., Klenk H.-P., Kletzin A., Treusch A.H., Meurer G., Eck J., Sensen C. and Schleper C. (2002) First Insight into the Genome of an Uncultivated Crenarchaeote from Soil. Environmental Microbiology 4:603-611

  • Sensen C.W. (2002) Using CAVE® Technology for Functional Genomics Studies. Diabetes Technology & Therapeutics 4:867-871

2001

  • Martino A., Schiraldi C., Fusco S., Di Lernia I., Costabile T., Pellicano T., Marotta M., Generoso M., van der Oost J., Sensen C.W., Charlebois R.L., Moracci M., Rossi M., and De Rosa M. (2001) Properties of the recombinant a–glucosidase from Sulfolobus solfataricus in relation to starch processing. Journal of Molecular Catalysis B: Enzymatic 11:4-6

  • She Q., Singh R.K., Confalonieri F., Zivanovic Y., Allard G., Awayez M.J., Chan-Weiher C.C.-Y., Clausen I.G., Curtis B.A., De Moors A., Erauso G., Fletcher C., Gordon P.M.K., Heikamp-de Jong I., Jeffries A.C., Kozera C.J., Medina N., Peng X., Thi-Ngoc H.P., Redder P., Schenk M.E., Theriault C., Tolstrup N., Charlebois R.L., Doolittle W.F., Duguet M., Gaasterland T., Garrett R.A., Ragan M.A., Sensen C.W. and Van der Oost J. (2001) The complete genome of the crenarchaeon Sulfolobus solfataricus P2. PNAS 98:7835-7840 (online)

  • Mueller M., Lee J.A., Gordon P., Gaasterland T., Sensen C.W. (2001) The presence of prokaryotic and eukaryotic species in all subgroups of the PPi-dependent Group II phosphofructokinase protein family. J. Bacteriol. 183:6714-6716> (online)

2000

  • Marcil M., Brooks-Wilson A., Clee S.M., Roomp K., Zhang L.H., Yu L., Collins J.A., van Dam M., Molhuize H.O., Loubster O., Ouellette B.F., Sensen C.W., Fichter K., Mott S., Denis M., Boucher B., Pimstone S., Genest J. Jr., Kastelein J.J., Hayden M.R. (1999) Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux. Lancet 16;354(9187):1341-1346 online) (Charlebois R.L., Singh R.K., Chan-Weiher C.C.-Y., Allard G., Chow C., Confalonieri F., Curtis B., Duguet M., Erauso G., Faguy D., Gaasterland T., Garrett R.A., Gordon P., Jeffries A.C., Kozera C., Kushwaha N., Lafleur É., Medina N., Peng X., Penny S.L., She Q., St. Jean A., van der Oost J., Zivanovic Y., Doolittle W.F., Ragan M.A., Sensen C.W. (2000) Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2. Genome 43:116-136

  • Martusewitsch E., Sensen C., Schleper C. (2000) High spontaneous mutation rate in the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by transposable elements. J. Bact. 182:2574-2581 (online)

  • Gaasterland T., Sczyrba A., Thomas E., Aytekin-Kurban G., Gordon P., Sensen C.W. (2000) MAGPIE/EGRET Annotation of the 2.9 Mb Drosophila melanogaster ADH Region. Genome Research 10:502-510 (online)

  • Hanneart V., Brinkmann H., Nowitzki U., Lee J.A., Albert M.-A., Sensen C.W., Gaasterland T., Müller M., Michels P., Martin W. (2000) Enolase from Trypanosoma brucei, from the amitochondriate protist Mastigamoeba balamuthi, and from the chloroplast and cytosol of Euglena gracilis: Pieces in the evolutionary puzzle of the eukaryotic glycolytic pathway. Mol. Biol. Evol. 17:989-1000 (online)

  • Tolstrup N., Sensen C.W., Garrett R.A., Clausen I.G. (2000) Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus. Extremophiles 4:175-179

  • Moracci M., Ponzano B.C., Trincone A., Fusco S., De Rosa M., van Der Oost J., Sensen C.W., Charlebois R.L., Rossi M. (2000) Identification and molecular characterization of the first alpha -xylosidase from an archaeon. J. Biol. Chem. 275:22082-22089 (online)

Prior to 2000

  • Schneider- Poetsch, H.A.W., Sensen, C., Hanelt, S. (1991) Are Bacterial Sensory Systems Models for Phytochrome Action? Hydrophobic Cluster Analysis of the Phytochrome Module Related to Bacterial Transmitter Modules. Z. Naturforsch. 46c:750-758.

  • Sensen, C. W., Heimann, K., Melkonian, M. (1993) The production of clonal and axenic cultures of microalgae using fluorescence activated cell sorting (FACS). Eur J Phycol 28:93-97.

  • Wiemann, S., Voss, H., Schwager, C., Rupp, T., Stegemann, J., Zimmermann, J., Grothues, D., Sensen, C., Erfle, H., Hewitt, N., Banrevi, A., Ansorge, W. (1993) Sequencing and Analysis of 51.6 kilobases on the Left Arm of Chromosome XI from Saccharomyces cerevisiae Reveals 23 Open Reading Frames Including the FAS1 Gene. Yeast 9:1343-1348 ncbi_res.gif (315 bytes)

  • Voss, H., Wiemann, S. Grothues, D., Sensen, C., Zimmermann, J., Schwager, C., Stegemann, J., Erfle, H., Rupp, T., Ansorge, W. (1993) Automated Low- Redundancy Large- Scale DNA Sequencing by Primer Walking. Biotechniques 15:714-721 ncbi_res.gif (315 bytes)

  • Grothues D., Voss H., Stegemann J., Wiemann S., Sensen C., Zimmermann J., Schwager C., Erfle H., Rupp T., Ansorge W. (1993) Separation of up to 1000 bases on a modified A.L.F. DNA sequencer. Nucl. Acids Res. 21:6042-6044 ncbi_res.gif (315 bytes) (online)

  • Dujon B., ..., Sensen C., ... et al. (1994) Complete DNA sequence of yeast chromosome XI. Nature 396:371-378

  • Voss H., Tamames J., Teodoru C., Valencia A., Sensen C., Wiemann S., Schwager C., Zimmermann J., Sander C., Ansorge W. (1995) Nucleotide sequence and analysis of the centromeric region of yeast chromosome IX. Yeast 11:61-78

  • Kranz H.D., Miks D., Siegler M.L., Capesius I., Sensen C.W., Huss V.A.R. (1995) The Origin of Land Plants: Phylogenetic Relationships between Charophytes, Bryophytes, and a Club Moss Inferred from Complete Small Subunit Ribosomal RNA Gene Sequences. J. Mol. Evol. 41:74-84

  • Gaasterland T., Sensen C. W. (1996) MAGPIE: Using multiple tools for automated genome interpretation. Trends in Genetics 12:76-78

  • Keeling P.J., Klenk H.P., Singh R.K., Feeley O., Schleper C., Zillig W., Doolittle W.F., Sensen C.W. (1996) Complete Nucleotide Sequence of the Sulfolobus islandicus Multicopy Plasmid pRN1. Plasmid 35:141-144

  • Charlebois R.L., Gaasterland T., Ragan M.A., Doolittle W.F., Sensen C.W. (1996) The Sulfolobus solfataricus P2 genome project. FEBS Letters 389:88-91

  • Sensen C.W., Klenk H.P., Singh R. K., Allard G., Chan C.C.-Y., Liu Q., Penny S., Young F., Schenk M., Gaasterland T., Doolittle W.F., Ragan M.A., Charlebois R.L. (1996) Organizational characteristics and information content of an archaeal genome: 156 kbp of contiguous sequence from Sulfolobus solfataricus P2. Mol. Microbiol. 22:175-191

  • Gaasterland T., Sensen C.W. (1996) Fully automated genome analysis that reflects user needs and preferences - A detailed introduction to the MAGPIE system architecture -. Biochimie 78:302-310

  • Ragan M.A., Logsdon J.M. Jr., Sensen C.W., Charlebois R.L., Doolittle W.F. (1996) An archaeal homolog of pelota, a meiotic cell division protein in eukaryotes. FEMS Microbiology Letters 144:151- 155

  • Charlebois R.L., Sensen C.W., Doolittle W.F., Brown J.R. (1997) Evolutionary analysis of the hisCGABdFDEHI gene cluster from the archaeon Sulfolobus solfataricus P2. J. Bacteriol. 179:4429-4432 (online)

  • Patwary M.U., Sensen C.W., MacKay R.M., van der Meer J.P. (1998) Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta). J. Phycol 34:299-305

  • Sensen C.W., Charlebois R.L., Chow C., Clausen I.G., Curtis B., Doolittle W.F., Duguet M., Erauso G., Gaasterland T., Garrett R.A., Gordon P., Heikamp de Jong I., Jeffries A.C., Kozera C., Medina N., De Moors A., van der Oost J., Phan H., Ragan M.A., Schenk M.E., She Q., Singh R.K., Tolstrup N. (1998) Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles 2:305-312

  • Keeling P.J., Klenk H.-P., Singh R.K., Schenk M.E., Sensen C.W., Zillig W., Doolittle W.F. (1998) Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles 2:391-393

  • Charlebois R.L., She Q., Sprott D.B., Sensen C.W., Garrett R.A. (1998) Sulfolobus genome: from genomics to biology. Curr. Opin. Microbiol. 1:584-588

  • Romine M.F., Stilwell, L., Wong K.-K., Thurston S.J., Sisk E.C., Sensen C., Gaasterland T., Frederickson J.K., Saffer. J.D. (1999) Complete Sequence of a 184-Kilobase Catabolic Plasmid from Sphingomonas aromaticivorans Strain F199. J. Bacteriol. 181:1585-1602 (online)

  • Napoli A., van der Oost J., Sensen C., Charlebois R.L., Rossi M., Ciamarella M. (1999) An Lrp-like Protein of the Hyperthermophilic Archaeon Sulfolobus solfataricus Which binds to its own promoter. J. Bacteriol. 181:1474-1480 (online)

  • Albers S.-V., Elferink M.G.L., Charlebois R.L., Sensen C.W. Driessen A.J.M. Konings W.N. (1999) Glucose transport in the extremely thermoacidophilic Sulfolobus solfataricus involves a high affinity membrane-integrated binding protein. J Bacteriol. 181:4285-4291 (online)

  • Brooks-Wilson A., Marcil M., Clee S.M., Zhang L.H., Roomp K., van Dam M., Yu L., Brewer C., Collins J.A., Molhuizen H.O.F., Loubse O., Ouellette B.F.F., Fichter K., Ashbourne-Excoffon K.J.D., Sensen C.W., Scherer S., Mott S., Denis M., Martindale D., Frohlich J., Morgan K., Koop B., Pimstone S., Kastelein J.J.P., Genest Jr. J., Hayden M.R. (1999) Mutations in the ABC1 gene in Tangier disease and familial high-density lipoprotein deficiency. Nature Genetics 22:336-345

  • Kletzin A., Liedke A., Ulrich T., Charlebois R.L., Sensen C.W. (1999) Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of plasmids from extremely thermophilic and acidophilic Archaea. Genetics 152:1307-1314 ncbi_res.gif (315 bytes) (online)

  • De Felice M., Sensen C.W., Charlebois R., Rossi M., Pisani F.M. (1999) Two DNA polymerase sliding clamps from the archaeon Sulfolobus solfataricus. J. Mol. Biol. 291:47-57 ncbi_res.gif (315 bytes) (online)

  • Marcil M., Brooks-Wilson A., Clee S.M., Roomp K., Zhang L.H., Yu L., Collins J.A., van Dam M., Molhuize H.O., Loubster O., Ouellette B.F., Sensen C.W., Fichter K., Mott S., Denis M., Boucher B., Pimstone S., Genest J. Jr., Kastelein J.J., Hayden M.R. (1999) Mutations in the ABC1 gene in familial HDL deficiency with defective cholesterol efflux. Lancet 16;354(9187):1341-1346 ncbi_res.gif (315 bytes) (online)



Books edited:




  • Glasgow J., Littlejohn T., Major F., Lathrop R., Sankoff D., Sensen C. [Eds] (1998) Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA. ISBN 1-57735-053-7

  • Sensen, C.W. [Ed.] (2001) Genomics and Bioinformatics. Biotechnology 2nd Edition Volume 5b. Wiley-VCH, 462 pages. ISBN 3-527-28328-5 [Amazon.com]

  • Sensen, C.W. [Ed.] (2002) Essentials of Genomics and Bioinformatics. Wiley-VCH, 428 pages. ISBN 3-527-30541-6 [Amazon.com]

  • Sensen, C.W. [Ed.] (2005) Handbook of Genome Research. Wiley-VCH. ISBN 3-527-31348-6 [Amazon.com]

  • Sensen, C.W., Hallgrímsson, B. [Eds.] (2009) Advanced Imaging in Biology and Medicine - Technology, Software Environments, Applications. Springer Verlag, Heidelberg, 445 pages. ISBN 978-3-540-68992-8 [Amazon.com]

Reviewed Conference Proceedings:

2010

  •   Gordon P.M.K., Barker K., Sensen C.W. (2010) Can Biologists Effectively Build Workflows, Without Programming? Proceedings of the 7th Database Integration for the Life Sciences Conference (DILS 2010) pp. 74-89
  • Gordon P.M.K., Barker K., Sensen C.W. (2010) Programming-by-example meets the Semantic Web - Using Ontologies and Web Services to close the Semantic Web. Proceedings of the IEEE Visual Languages and Human Centric Computing Conference 2010.
  • Xiao M., Soh J., Do T., Meruvia-Pastor O., Sensen C.W. (2010) Concurrent Visualization of and Mapping between 2D and 3D Medical Images for Disease Pattern Analysis. Supplementary Proceedings of Pattern Recognition in Bioinformatics, 5th IAPR International Conference, PRIB 2010 in Nijmegen, the Netherlands. 6 pages
  • Xiao M., Soh J., Taschuk M.L., Turinsky A., Parsons T.E., Hallgrímsson B., Sensen C.W. (2010) Visualization of Biological Shape Transformations by 3D Model Morphing. ACM International Conference on Bioinformatics and Computational Biology 2010, Niagara Falls, New York, U.S.A. pp. 460-462

2009

  •  Meruvia-Pastor O., Soh J., Xiao M., Schmidt E., Logan C., Boughner J.C., Jones N., Osborn D., Santiago J., Gittleman J., Hallgrímsson B., Sensen C.W. (2009) Fast Interactive Integration of Cross-Sectional Image Datasets and Surface Data for Morphometric Analysis. Stud Health Technol Inform 142:183-188
  •  Xiao M., Soh J., Merivua-Pastor O., Osborn D., Lam N., Hallgrímsson B., Sensen C.W. (2009) An Efficient Virtual Dissection Tool to Create Generic Models for Anatomical Atlases. Stud Health Technol Inform 142:426-428

2008

  •  Borowski K, Soh J., Sensen C.W. (2008) Visual Comparison of Multiple Gene Expression Datasets in a Genomic Context. In: Proceedings of the 5th International Symposium on Integrative Bioinformatics (Leucorea, Lutherstadt Wittenberg) pp.103-116
  •  Gordon P., Sensen C.W. (2008) Bridging Existing Bioinformatics Resources Into the Semantic Web. In: SIG Meeting Program Materials for the 16th Annual International Conference on Intelligent Systems for Molecular Biology (Toronto, Canada) p.146
  • Gordon P.M.K., Sensen C.W. (2008) Creating Bioinformatics Semantic Web Services from Existing Web Services: A real-world application of SAWSDL. In: Proceedings of the IEEE International Conference on Web Services (Beijing, China) pp. 608-614

2007

  • Dong A., Turinsky A.L., Ah-Seng A., Taschuk M., Gordon P.M.K., Hochauer K., Fröls S., Soh J., Sensen C.W. (2007) Enhancing Bluejay with Scalability, Genome Comparison and Microarray Visualization. In: Decker R., Lenz H.-J. [eds.] Advances in Data Analysis (GfKl 2006 Conference Proceedings). Springer Berlin - Heidelberg pp. 557-568
  • Gordon P.M.K., Kawas E., Wilkinson M.D., Sensen C.W. (2007) Using a novel data transformation technique to provide the EMBOSS software suite as Semantic Web Services. In: Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (San Jose, CA) pp. 117-124
  • Soh J., Gordon P.M.K., Ah-Seng A., Turinsky A., Taschuk M., Borowski K., Sensen C.W. (2007) Bluejay: A Highly Scalable and Integrative Visual Environment for Genome Exploration. In: Proceedings of the IEEE Congess on services [The 1st IEEE International Workshop on Service Oriented Technologies for Biological Databases and Tools, Salt Lake City, Utah] pp. 92-98
  • Wang C., Gordon P.M.K., Turinsky A.L., Sensen C.W. (2007) Combining a High-throughput Bioinformatics Grid and Bioinformatics Web Services. In: Dubitzky W., Schuster A., Sloot P.M.A., Schroeder M., Romberg M [eds.] Distributed, High-Performance and Grid Computing in Computational Biology (GCCB 2006 Conference Proceedings). Springer Berlin - Heidelberg, pp. 1-10

2006

  • Wang C., Gordon P.M.K., Turinsky A.L., Sensen C.W. (2006) Combining a High-throughput Bioinformatics Grid and Bioinformatics Web Services. GCCB 2006 Conference Proceedings [in press]
  • Dong A., Turinsky A.L., AhSeng A., Taschuk M., Gordon P.M.K., Hochauer K., Fröls S., Soh J., Sensen C.W. (2006) Enhancing Bluejay with Scalability, Genome Comparison and Microarray Visualization. GfKl 2006 Conference Proceedings [in press]

2005

  • Pan Y., Sensen C.W. (2005) Modular Neural Networks and their Application in Exon Prediction. In: M. He, S. Narasimhan, S. Petoukhov [eds.] Advances in Bioinformatics and its Applications. World Scientific Publishing Co. Pte. Ltd. pp. 47-61

2004

  • Gordon P.M.K., Stromer J., Turinsky A.L., Xu E., Sensen C.W. (2004) Bluejay: A Biologcial Sequence Browser featuring Knowledge Integration. Proceedings of the Fourth Virtual Conference on Genomics and Bioinformatics 3:4-11 (online)

2000

  • Gordon P., Sensen C.W. (2000) Bluejay: A Browser for Linear Units in Java. In: Pollard, A. Mewhort D.J.K., Weaver D.F. [eds.] High Performance Computing Systems and Applications. Kluwer Academic Publishers, pp. 183-194

Book Chapters:

2008-2009

  •   Hallgrímsson B., Boughner J., Turinsky A., Parsons T.E., Logan C., Sensen C.W. (2009) Geometric Morphometrics and the Study of Development. In Sensen, C.W., Hallgrímsson, B. [Eds.] Advanced Imaging in Biology and Medicine - Technology, Software Environments, Applications. Springer Verlag, Heidelberg pp. 319-338
  • Sensen C.W., Soh J. (2009) CAVEman, an Object-Oriented Model of the Human Body. In Sensen, C.W., Hallgrímsson, B. [Eds.] Advanced Imaging in Biology and Medicine - Technology, Software Environments, Applications. Springer Verlag, Heidelberg pp. 289-300
  • Soh J., Gordon P.M.K., Sensen C.W. (2009) Genomic Data Visualization - The Bluejay System.  In Sensen, C.W., Hallgrímsson, B. [Eds.] Advanced Imaging in Biology and Medicine - Technology, Software Environments, Applications. Springer Verlag, Heidelberg pp. 395-400
  • Turinsky A., Sensen C.W. (2008) Virtual Reality Meets Functional Genomics. In S.A. Krawetz [ed.] Bioinformatics for Systems Biology. Humana Press, Totowa, NJ pp. 609-621

2005

  • Turinsky A., Gordon P., Xu E., Stromer J., Sensen C.W. (2005) Genomic Data Representation through Images: The MAGPIE/Bluejay System. In C.W. Sensen [ed.] Handbook of Genome Research. Wiley- VCH, Weinheim, pp. 383-413
  • Sensen C.W. (2005) The Future of Large-Scale Life Science Research. In C.W. Sensen [ed.] Handbook of Genome Research. Wiley- VCH, Weinheim, pp. 573-584 Gordon P., Sensen C.W. (2005) Oligonucleotide Design from Principle to Practice. In A. Markoff [ed.] Analytical Tools for DNA, Genes and Genomes (Nuts & Bolts). DNA Press, Eagleville, PA pp. 255-277

2002

  • Sensen, C.W. (2002) Genomics - Five years from now. In C.W. Sensen [ed.] Essentials of Genomics and Bioinformatics.Wiley-VCH, Weinheim, pp. 396-405
  • Gordon P., Gaasterland T., Sensen C.W. (2002) Genomic Data Representation Through Images: MAGPIE as an Example. In C.W. Sensen [ed.] Essentials of Genomics and Bioinformatics. Wiley-VCH, Weinheim, pp. 345-363

2001

  • Sensen, C.W. (2001) Genomics - Five years from now. In C.W. Sensen [ed.] Genomics and Bioinformatics. Wiley-VCH, Weinheim, pp 431-439
  • Gordon P., Gaasterland T., Sensen C.W. (2001) Genomic Data Representation Through Images: MAGPIE as an Example. In C.W. Sensen [ed.] Genomics and Bioinformatics. Wiley-VCH, Weinheim, pp 379-397

Prior to 2000

  • Sensen, C.W. (1993) Molecular phylogeny of algal plastids: a brief review of host/endosymbiont genome development based on sequence comparisons. In: Lewin, R.A. [ed]: Prochorophytes, Symbiogenesis and the Origins of Plastids, Chapman and Hall, New York, London, pp. 171-192

  • Sensen C.W., Charlebois R.L., Singh R.K., Klenk H.P., Ragan M.A., Doolittle W.F. (1997)Sequencing the genome of Sulfolobus solfataricus P2. In: de Bruijn F.J., Lupski J.R., Weinstock G.M. [eds.]: Bacterial Genomes: Physical Structure and Analysis, Chapman and Hall, New York, London, pp. 552-558

  • Gaasterland T., Sensen C.W. (1997) MAGPIE: A Multipurpose Automated Genome Project Investigation Environment for Ongoing Sequencing Projects. In: de Bruijn F.J., Lupski J.R., Weinstock G.M. [eds.]: Bacterial Genomes: Physical Structure and Analysis, Chapman and Hall, New York, London, pp. 559-566

  • Sensen C.W. (1999) Sequencing Microbial Genomes. In: Charlebois, R.L. [ed.]: Organization of the Prokaryotic Genome. ASM Press, Washington, pp. 1-9


Prefaces:


  • Realism - A Study in Human Structural Anatomy (2003) Kasterstener Publications, Red Deer [online information]


Abstracts and unreviewed Publications:

2009

  •  Martinez A., Gordon P., Sensen C.W., Trelles O. (2009) Towards closing the gap between user data and standardized input. NETTAB 2009 Conference Proceedings [in press]  
  • Peng F.Y., Sensen C.W., Weselake R.J. (2009) A Bioinformatics Approach for Decyphering Transcriptional Regulation of Seed Storage Reserve Accumulation in Arabidopsis. 7th Canadian Plant Genomics Workshop, Saskatoon

2008

  • Cooper D.M.L., Clement J.G., Thomas C.D.L., Hallgrímsson B., Turinsky A.L., Sensen C.W., Goldman H. (2008) Advances in High Resolution Imaging and the Emerging Application of 3D Cortical Bone Histomorphometry in interpreting Health. AAPA 2008 Conference Abstract
  • Turinsky A., Fanea E., Trinh Q., Dong X., Stromer J., Shu X., Wat S., Hallgrímsson B., Hill J.W., Edwards C., Grosenik B., Yajima M., Sensen C.W. (2008) Integration of Genomic and Medical Data into a 3D Atlas of Human Anatomy. Medicine Meets Virtual Reality Conference Abstract
  • Zadeh Z.E., Hittel D., Severson D., Hepple R., Sensen C., Shearer J. (2008) Status - Hight Fat Feeding Increases Mitochondrial Content While Compromising Outer Membrane Integrity in the Mouse Heart. Obesity 16:731, S261

2007

  • Gordon P.M.K., Sensen C.W. (2007) A Pilot Study into the Usability of a Scientific Workflow Construction Tool. Technical Report #2007-874-26. Department of Computer Science, University of Calgary, Canada (online)
  • Ruecker N.J., Topp E., Edge T.A., Lapen D.R., van Bochove E., Schreier H., Koning W., Miller J., Khan I.U.H., Gannon V., Sensen C.W., Neumann N.F. (2007) Molecular forensic profiling of Cryptosporidium spp. to determine the diversity of fecal contamination in four Canadian w73atersheds. 2007 Water Quality Technology Conference Abstract

2004

  • Tjaden B., Zaparty M., Ahmed H., Michalke K., Sensen C.W., Gordon P., Klenk H.-P., Schuster S.C., Hensel R., Siebers B. (2004) From genome to function: reconstruction of the central carbohydrate metabolism in Thermoproteus tenax. (2004) Bioperspectives (Wiesbaden, Germany) conference proceedings.

  • Sensen C.W. (2004) Bioinformatics and Visual Genomics: Seeing Genes, Proteins and Metabolism. Drug Metabolism Reviews 36:14

2002

  • Sensen, C.W., Brum J., Gordon P., Hood M., Lindahl G., Schulman M., Spindler C., Stuart M., Unger S. (2002) Establishment of the first Java 3DTM enabled CAVE - A Whitepaper. [PDF formatted file]

Prior to 2000

  • Sensen, C.W., Melkonian, M. (1992) PHYLIP 3.4 Tips and Tricks. Plant Molecular Evolution Newsletter 1:32-36. Sensen, C.W., Hinkle, G.J., Sogin, M.L., Melkonian, M. (1992) Spermatozopsis similis gene for 18S rRNA [Sequence Announcement]. Plant Molecular Biology 20:1209

  • Sensen C.W., Banrevi A., Capesius I. (1993) The 18S rDNA sequence from Pinus wallichiana [Sequence Announcement]. Plant Molecular Biology 24:259

  • Singh R.K., Sensen C.W., Ragan M (1995) Direct cosmid sequencing (40 kb inserts) NRC internal report No 75

  • W. Ford Doolittle, Robert L. Charlebois, Mark A. Ragan and Christoph W. Sensen (1996) The Sulfolobus Genome Project: Process and Progress [Plenary Speaker Abstract]. Microbial and Comparative Genomics 1:200

  • Gaasterland T., Sensen C. (1996) Using Multiple Tools for Automated Genome Interpretation in and Integrated Environment. MCS preprint #P576, 4 pages

  • Sensen C.W., Gaasterland T., Ragan M.A., Doolittle W.F., Charlebois R.L. (1997) Sequencing and analysis of the Sulfolobus solfataricus P2 genome. Microbial and Comparative Genomics 1:364

  • Goffeau A., ..., Sensen C., ... et al. (1997) The Yeast Genome Directory. Nature 387 (suppl.):5 (online)

  • Sensen C.W., Charlebois R.L., Doolittle W.F., Duguet M., Gaasterland T., Garrett R., van der Oost J., Ragan M.A. (1998) Sequencing and analysis of the Sulfolobus solfataricus P2 genome [plenary speaker abstract] Microbial and Comparative Genomics 3:62

  • Singh R.K., Chow C., Curtia B., Gordon P., Kozera C., Ragan M.A., Sensen C.W. (1998) A strategy for Genome Sequencing in small laboratories: Sulfolobus as an example [poster abstract] Microbial and Comparative Genomics 3:79

Electronic Publications:

2007 

  •  Sensen C.W. [Ed.] (2007) Essentials of Genomics and Bioinformatics. Wiley-VCH, 419 pages. ISBN 9783527612642

2000

  • Sensen C.W., Dalton T.E., Brousseau R., Clark F., Crosby W., Foxall R.A., Liu Q.Y., Hemmingsen S., Nash J., Ragan M.A., Thomas D.Y., Wood G., van der Meer J.P. (2000) The Canadian Bioinformatics Resource - New Opportunities for Bionformatics in Canada - TERENA Networking Conference Online Proceedings. [PDF formatted file]

Prior to 2000


Posters:

2010

  •  ACM International Conference 2010 on Bioinformatics and Computational Biology in Niagara Falls, NY: Xiao M., Soh J., Taschuk M., Turinsky A., Parsons T.E., Hallgrímsson B., Sensen C.W.: Visualization of Biological Shape Transformations by 3D Model Morphing
  •  International Symposium on Microbial Ecology ISME 2010 in Seattle: Chatterjee I., Caffrey S.M., Dong X., Sensen C.W., Voordouw G.: Analysis of the composition of microbial communities in hydrocarbon resource environments by pyrosequencing of 16S genes.
  • Pattern Recognition in Bioinformatics in Berg en Dal, The Netherlands (2010): Xiao M., Soh J., Do T., Meruvia-Pastor O., Sensen C.W.: Concurrent Visualization and Mapping between 2D and 3D Medical Images for Disease Pattern Analysis.
  • PRION 2010 in Salzburg: Sensen M., Beck J., Gordon P.M.K., Schütz E., Urnovitz H.B., Groschup M., Sutton T., Church R.B., Sensen C.W.: Identification of DNA Patterns from Circulating Nucleic Acids related to Bovine Spongiform Encephalopathy.

2009

  • iCORE Summit 2009 in Banff: Meruvia-Pastor O., Soh J., Schmidt E., Boughner J.C., Xiao M., Jamnizcky H.A., Hallgrímsson B., Sensen C.W.: Cell Distribution for Morphometrics Analysis Using Incremental Cell Search on Histology Samples of Mice Embryos.
  • iCORE Summit 2009 in Banff: Soh J., Meruvia-Pastor O., Xiao M., Tang P., Lim E., Wishart D., Sensen C.W.: Visual Integration of Pharmacokinetics Data in the CAVEman System
  • iCORE Summit 2009 in Banff: Xiao M., Soh J., Meruvia-Pastor O., Schmidt E., Hallgrímsson B., Sensen C.W.: Building Generic Anatomical Models Using Virtual Cutting and Iterative Registration.

2008

  • iCORE Summit 2008 in Banff: Meruvia-Pastor O., Xiao M., Schmidt E., Osborn D., Logan C., Boughner J., Santiago J., Gittleman J., Hallgrímsson B., Sensen C.W.: Integrating Cell Proliferation and Morphometrical Data for Development Analysis of Mice.
  •  iCORE Summit 2008 in Banff: Xiao M., Soh J., Meruvia O., Osborn D., Lam N., Hallgrímsson B., Sensen C.W.: An Efficient Virtual Dissection Tool to Create Generic Models for Anatomic Atlases.
  •  Intelligent Systems for Molecular Biology (ISMB) in Toronto (2008): Gordon P., Wilkinson M., Sensen C.: Making the Semantic Web Usable for Biologists.

2007

  •   iCORE Summit 2007 in Banff: Gordon P., Barker K., Sensen C.W.: Getting Biologists to Write Programs, Without Them Even Knowing It.
  • iCORE Summit 2007 in Banff: Soh J., Gordon P., Taschuk M., Dong A., Sensen C.W.: Genome Browsing and Comparison in Bluejay Using Text View and Waypoints.

2006

  • iCORE Summit 2006 in Banff: Sensen C.W., Soh J., Gordon P., Dong A., Taschuk M., Borowski K: 2D Bioinformatics: Enhancing the Bluejay Browser with new Functions

  • iCORE Summit 2006 in Banff: Sensen C.W., Turinsky A., Dong X., Fanea E., Shu X., Stromer J., Wat S.: 4D Bioinformatics: Mining Medical and Genomics Data in Virtual Patients.

2005

  • iCORE Summit 2005 in Banff: Dong A., Gordon, P.M.K., Turinsky A.L., Sensen C.W.: GC skew in Bluejay.

  • iCORE Summit 2005 in Banff: Stromer J.N., Turinsky A.L., Sensen C.W.: JABIRU: Integrating Software Based Volume Rendering and Interaction into Immersive 4D Bioinformatics.

2004

  • AAA Experimental Biology 2004: Cooper D.M.L., Turinsky A.L., Sensen C.W., Hallgrimsson B.: A 4D Perspective on Cortical Bone Remodelling by Micro-CT.

2002

  • Canadian Society of Animal Science (CSAS) in Quebec City (2002): Hansen C., Fu A., Meng Y., Li C., Okine E., Sensen C.W., Gordon P., Moore S.S.: The Bovine Gastrointestinal Tract: A Gene Expression Profile.

  • Conference of the International Society of Animal Genetics (ISAG) in Göttingen (2002): Hansen C., Fu A., Meng Y., Li C., Okine E., Sensen C.W., Gordon P., Moore S.S.: The Bovine Gastrointestinal Tract: A Gene Expression Profile.

  • Intelligent Systems for Molecular Biology (ISMB) in Edmonton (2002): Gordon P., Sensen C: Osprey: An Application for a Wide Range of Oligonucleotide Design Tasks.

  • Intelligent Systems for Molecular Biology (ISMB) in Edmonton (2002): Pan Y., Sensen C.W., Heywood M., Shepherd M.: Integration of Exon Predictions Using Multilayer Perceptron and Mixture of Experts Neural Networks. 2000

  • 6th International Congress on Plant Molecular Biology (ISPMB) in Quebec City (2000): Sensen C.W.: The Canadian Bioinformatics Resource.

Prior to 2000

  • Botanikertagung 1990 (Regensburg): Christoph W. Sensen, Ralf Kämmerer, Barbara Thiel, Brigitte Walter und Michael Melkonian: Charakterisierung der plastidären DNA von Spermatozopsis similis Preisig et Melkonian, 1984 (Chlorophyceae)

  • Botanikertagung 1990 (Regensburg): Kirsten Heimann, Christoph W. Sensen und Michael Melkonian: Der Einsatz eines Zellsorters FACS-440 zur Erzeugung axenischer Klonkulturen von begeißelten Algen.

  • Genome Mapping and Sequencing 1993 in Cold Spring Harbor (U.S.A.): C. Schwager, S. Wiemann, T. Rupp, H. Voss, C. Sensen, J. Zimmermann and W. Ansorge: GeneSkipper - A software environment for DNA sequence assembly and analysis of large scale sequencing projects: Sequence analysis of cosmids from S. cerevisiae chromosome XI.

  • Genome Mapping and Sequencing 1993 in Cold Spring Harbor (U.S.A.): H. Voss, S. Wiemann, D. Grothues, C. Sensen, T. Rupp, J. Zimmermann, C. Schwager and W. Ansorge: Strategy for directed primer walking on plasmid and cosmid DNA from chromosome XI of S. cerevisiae using T7 DNA Polymerase and Fluorescein-15-*dATP as internal label.

  • Genome Mapping and Sequencing 1993 in Cold Spring Harbor (U.S.A.): J. Zimmermann, H. Voss, S. Wiemann, C. Sensen, C. Schwager, H. Erfle, J. Stegemann, T. Rupp, D. Grothues, and W. Ansorge: Fully Automated double stranded Sequencing Reactions with fluorescently labelled primers and Fluorescein-15-dATP.

  • Yeast Genome Sequencing Network 1994 in Manchester (U.K.): D.Grothues, C. Sensen, H. Voss, A. Banrevi, C. Teodoru, C. Schwager, S. Rechmann, T. Rupp, H. Drzonek, V. Benes, C. Vlcek, S. Wiemann, W. Ansorge: Sequencing of 50 kb on S. cerevisiae chromosome XV.

  • Genome Mapping and Sequencing 1994 in Cold Spring Harbor (U.S.A.): C. Schwager, S. Wiemann, C. Sensen, T. Rupp and W. Ansorge: GeneSkipper - an integrated software environment for DNA sequence assembly and analysis in megabase scale sequencing projects.

  • Genome Mapping and Sequencing 1994 in Cold Spring Harbor (U.S.A.): H. Voss, D. Grothues, C. Sensen, V. Benes, C. Vlcek, A. Banrevi, C. Teodoru, T. Rupp, H. Drzonek, S. Wiemann, S. Rechmann, C. Schwager, J. Zimmermann and W. Ansorge: Efficient low-redundancy DNA sequencing in the course of the Saccharomyces cerevisiae genome project.

  • CIAR Evolutionary Biology Program 1995 Annual Meeting in Val Morin: Gaasterland T., Sensen C.W.: MAGPIE: A Multipurpose Automated Genome Project Investiagion Environment for Ongoing Sequencing Projects.

  • Genome Mapping and Sequencing 1996 in Cold Spring Harbor (U.S.A.): Gaasterland T., Sensen C.W.: MAGPIE: Automating Whole Genome Analysis. Genome Mapping and Sequencing 1996 in Cold Spring Harbor (U.S.A.): Sensen C.W., Charlebois R.L, Ragan M.A., Doolittle W.F.: Sequencing and Analysis of the Sulfolobus solfataricus P2 genome.

  • Archaeal Gordon Conference 1996 in Plymouth/N.H. (U.S.A.): Klenk, H.P., Keeling, P.J., Schenk, M.E., Singh, R.K., Doolittle, W.F., Sensen, C.W.: Sulfolobus islandicus multicopy plasmid family pRN1/pRN2.

  • CIAR Evolutionary Biology Program 1997 Annual Meeting in Ottawa: Gaasterland T., Sensen C.W.: Annotating Genomes with MAGPIE. Microbial Genomes II Sequencing, Functional Characterization and Comparative Genomics 1998 in Hilton Head (U.S.A.): Singh R.K., Chow C., Curtis B., Gordon P., Kozera C., Ragan M.A., Sensen C.W.: A Strategy for Genome Sequencing in Small Laboratories: Sulfolobus as an example.

  • Extremophiles (1998) in Brest, France: Napoli A., van der Oost J., Sensen C., Rossi M., Ciaramella M.: A gene encoding a bacterial-like transcription regulation factor in Sulfolobus solfataricus.

  • Jahrestagung 1999 der Vereinigung für Allgemeine und Angewandte Mikrobiologie e.V. in Göttingen: Jacobi C., Klenk H.P., Sensen C., Fritz H.-J., Gottschalk G.: Methanosarcina mazei, sequencing the first member of the third order of Methanogens.

Talks:

2010

  •  Biological Research Center of the Hungarian Academy of Sciences (BRC) in Szeged, Hungary (2010): Christoph W. Sensen: From 2D to 4D Bioinformatics. [invited talk]
  •  Epigenetics of Health and Disease in Lethbridge (2010): Christoph W. Sensen: Using Nucleic Acids in Blood as Markers for Infectious Diseases [invited talk]
  • Genome Alberta Genomics Workshop (2010): Christoph W. Sensen: A Computational Environment for the Characterization of Epigenetic Phenomena [invited talk]

2009

  •   APRI Live Animal Testing & the Clinical and Biological Perspective of Atypical BSE Workshop in Edmonton (2009): Christoph W. Sensen: TSE-specific Sequences can be Identified in Circulating Nucleic Acids from Experimentally Infected Live Elk and Cattle [invited talk]
  • CeBiTec Kolloquium in Bielefeld, Germany (2009): Christoph W. Sensen: From 2D Bioinformatics to 4D Systems Biology [invited talk]
  • Computer and Systems Biology Kolloquium at the HZI Braunschweig (2009): Christoph W. Sensen: Studien zur Wirt-Pathogen Interaktion [invided talk]
  • From Baden to Banff (2009): Christoph W. Sensen: Towards a Life Testing System for Chronic Wasting Disease and BSE [invited talk]
  • Prionet Canada Video-conferencing Regional PrP Seminar Series (2009): Christoph W. Sensen: Characterization of DNA Sequences from Circulating Nucleic Acid Sequences in CWD-infected Elk [invited talk]
  • Prokagenomics in Göttingen, Germany (2009): Christoph W. Sensen: From Mycoplasma capricolum to 1000 complete microbial genomes: Building genome analysis and annotation tools for 15 years [invited talk]
  • Sanofi Aventis Biotalent Challenge Calgary Awards Ceremony (2009): Christoph W. Sensen: Creating CAVEman [invited talk]

2008

  •  Calgary Java Users Group (2008): Christoph W. Sensen: CAVEman, the world's first object-oriented model of human anatomy [invited talk]
  • Eighth Annual International Conference of the Canadian Proteomics Initiative (CPI) 2008 in Vancouver: Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]
  • EBI Cambridge (2008): Christoph W. Sensen: The Bluejay Genome Browser.
  • Helmholtz Centre for Infection Research in Braunschweig, Germany (2008): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]
  • Iconologia Symposium - Images in Transdisciplinary Perspectives - at Queen's University in Kingston (2008): Christoph W. Sensen: An Anatomical Model of the Human Body in Virtual Reality [invited talk]
  • International Symposium on Integrative Bioinformatics, Lutherstadt Wittenberg, Germany (2008): Christoph W. Sensen: Visual Comparison of Multiple Gene Expression Datasets in a Genomic Context
  • 3rd International Confence of Advanced Digital Technology in Head and Neck Reconstruction in Cardiff, UK (2008): Christoph W. Sensen: Touring into Human Anatomy for Virtual Head and Neck Surgery
  • Technische Universität Graz, Austria (2008): Christoph W. Sensen: Tools for Genome Analysis and Annotation and the Unraveling of Gene Function [invited talk]

2007

  •  CFIA Lethbridge (2007): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]  
  • PrP Canada (2007) in Calgary: Christoph W. Sensen, Stefanie Czub, Catherine Graham, Ekkehard Schütz, Howard Urnovitz: Preliminary Characterization of Chronic Wasting Disease in Elk

2006

  • GfKl 2006 in Berlin: Christoph W. Sensen: From 2D to 4D Bioinformatics [invited Semi-Plenary Lecture]

  • CFBS 49th Annual Meeting in Saskatoon (2006): Christoph W. Sensen: Three-Dimensional Presentation of Data [Plenary Lecture]

2005

  • Advanced Digital Technology in Head and Neck Reconstruction in Banff (2005): Christoph W. Sensen: 4D Bioinformatics and Medical Informatics [invited talk]

  • World Congress on Microarray Technology in Vancouver (2005): Christoph W. Sensen: Visual Representation of Gene Expression Patterns using Bluejay [invited talk]

  • Western GRID Summit in Banff (2005): Christoph W. Sensen: GRID and Visualization Efforts at the Sun Center of Excellence for Visual Genomics [invited talk]

  • VanBUG talk in Vancouver (2005): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]

  • First Genome Canada - Genome Denmark meeting in Copenhagen (2005): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]

  • The IASTED International Conference on Telehealth in Banff (2005): Christoph W. Sensen: Making Virtual Reality of a Fantastic Voyage [invited talk, keynote]

  • 53rd Meeing of the American Academy of Maxillofacial Prosthetics in Los Angeles (2005): Christoph W. Sensen: Using Virtual Reality Environments for Medical Research [invited talk]

  • ICE 2005 - The Tech Conference in Edmonton: Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]

  • Rocky '05 in Aspen (2005): Christoph W. Sensen: Visualizing Bioinformatics Results [invited keynote]

2004

  • University of Arkansas at Little Rock (2004): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]

  • 2nd International E. coli Alliance Conference on Systems Biology Project Gemini in Banff (2004): Christoph W. Sensen: MAGPIE and Bluejay: Tool and Data Integration for Systems Biology Germany-Canada / Agricultural-Genomics Team-building at the Rafter Six Ranch in Kananaskis (2004): Christoph W. Sensen: Bioinformatics in the Age of Systems Biology [invited talk]

  • Integrative Bioinformatics - Aspects of the Virtual Cell. Schloss Dagstuhl, Germany (2004): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]

  • Bioinformatics Colloqium at the Ludwig Maximilians Universität in Munich, Germany (2004): Christoph W. Sensen: From 2D to 4D Bioinformatics [invited talk]

  • 7th International ISSX Meeting in Vancouver (2004): Christoph W. Sensen: Bioinformatics and Visual Genomics: Seeing Genes, Proteins and Metabolism. [invited talk]

  • Fourth Virtual Conference on Genomics and Bioinformatics (2004): Christoph W. Sensen: Bluejay: A Biological Sequence Browser featuring Knowledge Integration [invited talk]

  • Plant Biotechnology Institute in Saskatoon (2004): Christoph W. Sensen: From 2D to 4D Bioin
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