BLAST Portal for Project Transcriptomes
We have updated our transcriptome data to make both 454 and Illumina assemblies available for BLAST analysis. The remaining 8 assembled transcriptomes from 454 sequencing and 11 from Illumina sequencing will be added shortly, with databases for all 75 plant species available by February 2013.
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Transcriptome Databases	454 Assembly All v1 databases Abies_balsamea_v1 Acacia_victoriae_v1 Amsonia_hubrichtii_v1 Argemone_mexicana_v1 Arnica_chamissonis_v1 Arnica_montana_v1 Artemisia_absinthium_v1 Artemisia_chamaemelifolia_v1 Artemisia_maritima_v1 Berberis_thunbergii_v1 Cannabis_sativa_v1 Catharanthus_longifolius_v1 Catharanthus_ovalis_v1 Catharanthus_roseus_v1 Centella_asiatica_v1 Chelidonium_majus_v1 Chrysanthemum_coronarium_v1 Cinchona_Ledgeriana_v1 Cissampelos_mucronata_v1 Citrus_paradisi_v1 Cocculus_trilobus_v1 Coleus_forskohlii_v1 Corydalis_cheilanthifolia_v1 Dianthus_superbus_v1 Diospyros_kaki_v1 Eschscholzia_californica_v1 Euphorbia_peplus_v1 Glaucium_flavum_v1 Grindelia_integrifolia_v1 Helichrysum_petiolare_v1 Humulus_lupulus_v1 Hydrangea_macrophylla_v1 Hydrastis_canadensis_v1 Hypericum_perforatum_v1 Isodon_rubescens_v1 Jeffersonia_diphylla_v1 Lactuca_sativa_v1 Ligularia_fischeri_v1 Lippia_dulcis_v1 Lonicera_japonica_v1 Mahonia_aquifolium_v1 Marrubium_vulgare_v1 Matricaria_recutita_v1 Menispermum_canadense_v1 Nandina_domestica_v1 Nigella_sativa_v1 Papaver_bracteatum_v1 Petasites_hybridus_v1 Piper_methysticum_v1 Platanus_occidentalis_v1 Primula_obconica_v1 Pseudolarix_amabilis_v1 Rauwolfia_serpentina_v1 Rosmarinus_officinalis_v1 Sanguinaria_canadensis_v1 Saponaria_vaccaria _v1 Silene_vulgaris_v1 Stylophorum_diphyllum_v1 Tabernaemontana_elegans_v1 Thalictrum_flavum_v1 Tinospora_cordifolia_v1 Tripterygium_wilfordii_v1 Valeriana_officinalis_v1 Vancouveria_hexandra_v1 Vinca_minor_v1 Xanthium_strumarium_v1 Xanthoriza_simplicissima_v1	Illumina Assembly * All v2,3 databases Abies_balsamea_v2 Acacia_victoriae_v2 Amsonia_hubrichtii_v2 Argemone_mexicana_v3 Arnica_chamissonis_v3 Arnica_montana_v2 Artemisia_absinthium_v3 Artemisia_chamaemelifolia_v3 Artemisia_maritima_v3 Berberis_thunbergii_v3 Cannabis_sativa_v3 Catharanthus_longifolius_v3 Catharanthus_ovalis_v3 Catharanthus_roseus_AJ_v2 Catharanthus_roseus_1L_v2 Catharanthus_roseus_LV_v2 Catharanthus_roseus_WT_v2 Cedrela_sinensis_v3 Centella_asiatica_v3 Chelidonium_majus_RT_v2 Chelidonium_majus_ST_v2 Chrysanthemum_coronarium_v3 Cinchona_Ledgeriana_v3 Cissampelos_mucronata_v3 Citrus_paradisi_v3 Cocculus_trilobus_v3 Coleus_forskohlii_v1 Corydalis_cheilanthifolia_v2 Dianthus_superbus_v2 Diospyros_kaki_v3 Eschscholzia_californica_v2 Euphorbia_peplus_v3 Glaucium_flavum_v2 Grindelia_integrifolia_v2 Helichrysum_petiolare_v3 Humulus_lupulus_v1 Hydrangea_macrophylla_v3 Hydrastis_canadensis_v3 Hypericum_perforatum_v2 Isodon_rubescens_v2 Jeffersonia_diphylla_v3 Lactuca_sativa_LC_v3 Lactuca_sativa_LW_v3 Ligularia_fischeri_v2 Lippia_dulcis_v2 Lonicera_japonica_v2 Mahonia_aquifolium_v3 Marrubium_vulgare_v3 Matricaria_recutita_v2 Menispermum_canadense_v3 Nandina_domestica_v3 Nigella_sativa_v3 Papaver_bracteatum_v2 Petasites_hybridus_v3 Piper_methysticum_v3 Platanus_occidentalis_BK_v3 Platanus_occidentalis_LF_v2 Primula_obconica_v1 Pseudolarix_amabilis_v2 Rauwolfia_serpentina_v3 Rosmarinus_officinalis_v1 Sanguinaria_canadensis_v2 Saponaria_vaccaria _v3 Silene_vulgaris_v2 Stylophorum_diphyllum_v3 Tabernaemontana_elegans_v2 Thalictrum_flavum_v3 Tinospora_cordifolia_v3 Tripterygium_wilfordii_v1 Valeriana_officinalis_v3 Vancouveria_hexandra_v3 Vinca_minor_v3 Xanthium_strumarium_v2 Xanthoriza_simplicissima_v3
Search Type	blastn tblastn tblastx
Output Type	pairwise query-anchored showing identities query-anchored no identities flat query-anchored, show identities flat query-anchored, no identities query-anchored no identities and blunt ends flat query-anchored, no identities and blunt ends XML Blast output tabular tabular with comment lines
E-value Threshold
Filter low complexity region	Yes No

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* v2 assemblies were performed with a Velvet/Oases based multi-kmer assembly pipeline. v3 assemblies were generated with the Trinity RNA-Seq assembler.

Disclaimer: In a small number of Illumina datasets generated, low quantities of cross contamination between sequence samples were detected. Please exercise your own caution when using the data provided.

Report errors, bugs or comments to Ye Zhang, Mei Xiao.

Citation: Xiao, M., Zhang, Y., et al., Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest. J. Biotechnol. (2013), http://dx.doi.org/10.1016/j.jbiotec.2013.04.004